IL_6XIQ_060

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_060 not in the Motif Atlas

Geometric match to IL_5VSU_003

Geometric discrepancy: 0.352

The information below is about IL_5VSU_003

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6XIQ|1|1|G|1565
6XIQ|1|1|A|1566
*
6XIQ|1|1|U|1572
6XIQ|1|1|G|1573
6XIQ|1|1|C|1574

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain X

60S ribosomal protein L25