IL_6XIQ_070
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- 6XIQ|1|1|U|1885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_070 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.5296
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6XIQ|1|1|A|1883
6XIQ|1|1|A|1884
6XIQ|1|1|U|1885
6XIQ|1|1|A|1886
6XIQ|1|1|A|1887
6XIQ|1|1|U|1888
6XIQ|1|1|G|1889
*
6XIQ|1|1|C|2346
6XIQ|1|1|U|2347
6XIQ|1|1|A|2348
6XIQ|1|1|U|2349
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain B
- RPL3 isoform 1
- Chain P
- 60S ribosomal protein L17-A
- Chain d
- 60S ribosomal protein L31-A
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