IL_6XIQ_155

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6XIQ|1|2|A|619, 6XIQ|1|2|A|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_155 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2122

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6XIQ|1|2|G|616
6XIQ|1|2|U|617
6XIQ|1|2|U|618
6XIQ|1|2|A|619
6XIQ|1|2|A|620
6XIQ|1|2|A|621
6XIQ|1|2|A|622
*
6XIQ|1|2|U|1104
6XIQ|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AQ

RPS26B isoform 1