IL_6XIQ_186
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6XIQ|1|2|C|1431, 6XIQ|1|2|U|1432, 6XIQ|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_186 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.2259
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6XIQ|1|2|U|1276
6XIQ|1|2|G|1277
6XIQ|1|2|G|1278
*
6XIQ|1|2|U|1430
6XIQ|1|2|C|1431
6XIQ|1|2|U|1432
6XIQ|1|2|G|1433
6XIQ|1|2|U|1434
6XIQ|1|2|G|1435
6XIQ|1|2|A|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S10-A
- Chain AK
- RPS20 isoform 1
- Chain AT
- RPS29A isoform 1
- Chain AZ
- Transfer RNA; tRNA
- Chain t
- RPS3 isoform 1
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