IL_6XIQ_245
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- ACCAC*GUCCCU
- Length
- 11 nucleotides
- Bulged bases
- 6XIQ|1|2|C|1158, 6XIQ|1|2|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_245 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.3923
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6XIQ|1|2|A|1157
6XIQ|1|2|C|1158
6XIQ|1|2|C|1159
6XIQ|1|2|A|1160
6XIQ|1|2|C|1161
*
6XIQ|1|2|G|1616
6XIQ|1|2|U|1617
6XIQ|1|2|C|1618
6XIQ|1|2|C|1619
6XIQ|1|2|C|1620
6XIQ|1|2|U|1621
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S16-A
- Chain AS
- RPS28A isoform 1
- Chain AX
- Transfer RNA; tRNA
- Chain v
- Rps5p
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