IL_6XIR_035
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6XIR|1|1|G|908, 6XIR|1|1|A|920, 6XIR|1|1|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_035 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.1179
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6XIR|1|1|G|907
6XIR|1|1|G|908
6XIR|1|1|G|909
*
6XIR|1|1|U|919
6XIR|1|1|A|920
6XIR|1|1|A|921
6XIR|1|1|U|922
6XIR|1|1|C|923
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain P
- 60S ribosomal protein L17-A
- Chain j
- 60S ribosomal protein L37-A
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