IL_6XIR_040
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_040 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.086
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XIR|1|1|G|991
6XIR|1|1|A|992
6XIR|1|1|G|993
6XIR|1|1|G|994
6XIR|1|1|U|995
6XIR|1|1|A|996
6XIR|1|1|A|997
*
6XIR|1|1|U|1052
6XIR|1|1|A|1053
6XIR|1|1|A|1054
6XIR|1|1|A|1055
6XIR|1|1|U|1056
6XIR|1|1|A|1057
6XIR|1|1|U|1058
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D
- RPL5 isoform 1
- Chain F
- 60S ribosomal protein L7-A
- Chain I
- RPL10 isoform 1
- Chain T
- 60S ribosomal protein L21-A
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