IL_6XIR_067

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_067 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1548

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6XIR|1|1|U|1645
6XIR|1|1|G|1646
6XIR|1|1|A|1647
6XIR|1|1|A|1648
6XIR|1|1|U|1649
*
6XIR|1|1|A|1806
6XIR|1|1|G|1807
6XIR|1|1|G|1808
6XIR|1|1|A|1809
6XIR|1|1|A|1810

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain Z

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A