IL_6XIR_113

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6XIR|1|1|A|3142, 6XIR|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_113 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1214

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6XIR|1|1|C|3004
6XIR|1|1|A|3005
6XIR|1|1|A|3006
6XIR|1|1|U|3007
*
6XIR|1|1|A|3139
6XIR|1|1|G|3140
6XIR|1|1|A|3141
6XIR|1|1|A|3142
6XIR|1|1|C|3143
6XIR|1|1|G|3144

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain O

60S ribosomal protein L16-A