IL_6XIR_116
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 6XIR|1|1|C|3092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_116 not in the Motif Atlas
- Homologous match to IL_5TBW_117
- Geometric discrepancy: 0.1363
- The information below is about IL_5TBW_117
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- No text annotation
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6XIR|1|1|U|3047
6XIR|1|1|A|3048
6XIR|1|1|A|3049
6XIR|1|1|U|3050
6XIR|1|1|U|3051
*
6XIR|1|1|A|3091
6XIR|1|1|C|3092
6XIR|1|1|C|3093
6XIR|1|1|A|3094
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain B
- RPL3 isoform 1
- Chain V
- 60S ribosomal protein L23-A
- Chain W
- RPL24A isoform 1
Coloring options: