3D structure

PDB id
6XIR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCGU*AA
Length
6 nucleotides
Bulged bases
6XIR|1|2|C|114
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XIR_141 not in the Motif Atlas
Homologous match to IL_4V88_392
Geometric discrepancy: 0.097
The information below is about IL_4V88_392
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

6XIR|1|2|U|113
6XIR|1|2|C|114
6XIR|1|2|G|115
6XIR|1|2|U|116
*
6XIR|1|2|A|300
6XIR|1|2|A|301

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AB
40S ribosomal protein S11-A
Chain u
40S ribosomal protein S4-A
Chain y
RPS8A isoform 1

Coloring options:


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