IL_6XIR_166
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 6XIR|1|2|A|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_166 not in the Motif Atlas
- Homologous match to IL_4V88_416
- Geometric discrepancy: 0.1873
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
6XIR|1|2|G|616
6XIR|1|2|U|617
6XIR|1|2|U|618
6XIR|1|2|A|619
6XIR|1|2|A|620
6XIR|1|2|A|621
6XIR|1|2|A|622
*
6XIR|1|2|U|1104
6XIR|1|2|C|1105
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AN
- 40S ribosomal protein S23-A
- Chain AQ
- RPS26B isoform 1
- Chain n
- RPL41A isoform 1
- Chain s
- RPS2 isoform 1
Coloring options: