IL_6XIR_175

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_175 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.1416

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6XIR|1|2|G|871
6XIR|1|2|G|872
6XIR|1|2|U|873
6XIR|1|2|C|874
*
6XIR|1|2|G|953
6XIR|1|2|G|954
6XIR|1|2|A|955
6XIR|1|2|C|956

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S13

Chain AR

40S ribosomal protein S27-A

Chain r

RPS1A isoform 1