IL_6XIR_180

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_180 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.3275

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6XIR|1|2|C|990
6XIR|1|2|G|991
6XIR|1|2|A|992
6XIR|1|2|A|993
6XIR|1|2|G|994
*
6XIR|1|2|C|1010
6XIR|1|2|G|1011
6XIR|1|2|U|1012
6XIR|1|2|A|1013
6XIR|1|2|G|1014

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain A

60S ribosomal protein L2-A

Chain AE

40S ribosomal protein S14-B

Chain AQ

RPS26B isoform 1

Chain n

RPL41A isoform 1