IL_6XZA_095

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6XZA|1|A2|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_095 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0604

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6XZA|1|A2|C|994
6XZA|1|A2|C|995
6XZA|1|A2|A|996
*
6XZA|1|A2|U|1159
6XZA|1|A2|G|1160

Current chains

Chain A2

23S rRNA

Nearby chains

Chain J2

50S ribosomal protein L13

Chain Q2

50S ribosomal protein L20

Chain R2

50S ribosomal protein L21

Chain Z2

50S ribosomal protein L30