IL_6XZA_104

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6XZA|1|A2|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_104 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1257

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6XZA|1|A2|G|1059
6XZA|1|A2|U|1060
6XZA|1|A2|U|1061
6XZA|1|A2|G|1062
*
6XZA|1|A2|C|1076
6XZA|1|A2|A|1077
6XZA|1|A2|U|1078
6XZA|1|A2|C|1079

Current chains

Chain A2

23S rRNA

Nearby chains

Chain H2

50S ribosomal protein L10

Chain I2

50S ribosomal protein L11