IL_6XZA_133

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6XZA|1|A2|A|1801, 6XZA|1|A2|C|1816, 6XZA|1|A2|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0412

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6XZA|1|A2|U|1798
6XZA|1|A2|G|1799
6XZA|1|A2|C|1800
6XZA|1|A2|A|1801
6XZA|1|A2|A|1802
6XZA|1|A2|A|1803
6XZA|1|A2|C|1804
*
6XZA|1|A2|G|1813
6XZA|1|A2|G|1814
6XZA|1|A2|A|1815
6XZA|1|A2|C|1816
6XZA|1|A2|G|1817
6XZA|1|A2|U|1818
6XZA|1|A2|A|1819
6XZA|1|A2|U|1820
6XZA|1|A2|A|1821

Current chains

Chain A2

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2