3D structure

PDB id
6XZA (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
6XZA|1|A2|A|1801, 6XZA|1|A2|C|1816, 6XZA|1|A2|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZA_133 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.0412
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

6XZA|1|A2|U|1798
6XZA|1|A2|G|1799
6XZA|1|A2|C|1800
6XZA|1|A2|A|1801
6XZA|1|A2|A|1802
6XZA|1|A2|A|1803
6XZA|1|A2|C|1804
*
6XZA|1|A2|G|1813
6XZA|1|A2|G|1814
6XZA|1|A2|A|1815
6XZA|1|A2|C|1816
6XZA|1|A2|G|1817
6XZA|1|A2|U|1818
6XZA|1|A2|A|1819
6XZA|1|A2|U|1820
6XZA|1|A2|A|1821

Current chains

Chain A2
23S rRNA

Nearby chains

Chain A1
Small subunit ribosomal RNA; SSU rRNA
Chain C2
50S ribosomal protein L2

Coloring options:


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