IL_6XZA_133
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 6XZA|1|A2|A|1801, 6XZA|1|A2|C|1816, 6XZA|1|A2|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XZA_133 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.0412
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XZA|1|A2|U|1798
6XZA|1|A2|G|1799
6XZA|1|A2|C|1800
6XZA|1|A2|A|1801
6XZA|1|A2|A|1802
6XZA|1|A2|A|1803
6XZA|1|A2|C|1804
*
6XZA|1|A2|G|1813
6XZA|1|A2|G|1814
6XZA|1|A2|A|1815
6XZA|1|A2|C|1816
6XZA|1|A2|G|1817
6XZA|1|A2|U|1818
6XZA|1|A2|A|1819
6XZA|1|A2|U|1820
6XZA|1|A2|A|1821
Current chains
- Chain A2
- 23S rRNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain C2
- 50S ribosomal protein L2
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