IL_6XZA_165

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6XZA|1|A2|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_165 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.071

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6XZA|1|A2|C|2636
6XZA|1|A2|U|2637
6XZA|1|A2|G|2638
6XZA|1|A2|A|2639
6XZA|1|A2|G|2640
*
6XZA|1|A2|C|2774
6XZA|1|A2|G|2775
6XZA|1|A2|A|2776
6XZA|1|A2|G|2777
6XZA|1|A2|A|2778
6XZA|1|A2|U|2779
6XZA|1|A2|G|2780
6XZA|1|A2|A|2781
6XZA|1|A2|G|2782

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L13