IL_6XZA_168

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6XZA|1|A2|U|2689, 6XZA|1|A2|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_168 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0607

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6XZA|1|A2|U|2687
6XZA|1|A2|G|2688
6XZA|1|A2|U|2689
6XZA|1|A2|U|2690
6XZA|1|A2|C|2691
*
6XZA|1|A2|G|2718
6XZA|1|A2|G|2719
6XZA|1|A2|U|2720
6XZA|1|A2|A|2721
6XZA|1|A2|G|2722

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain N2

50S ribosomal protein L17

Chain P2

50S ribosomal protein L19