IL_6Y7C_019

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6Y7C|1|2|U|313, 6Y7C|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1568

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6Y7C|1|2|U|311
6Y7C|1|2|A|312
6Y7C|1|2|U|313
6Y7C|1|2|C|314
6Y7C|1|2|A|315
6Y7C|1|2|A|316
*
6Y7C|1|2|U|348
6Y7C|1|2|U|349
6Y7C|1|2|U|350
6Y7C|1|2|C|351
6Y7C|1|2|A|352
6Y7C|1|2|A|353
6Y7C|1|2|C|354
6Y7C|1|2|G|355

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A

Chain X

40S ribosomal protein S23-A