IL_6Y7C_046

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_046 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.4141

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6Y7C|1|2|G|885
6Y7C|1|2|U|886
6Y7C|1|2|A|887
6Y7C|1|2|U|888
*
6Y7C|1|2|A|924
6Y7C|1|2|G|925
6Y7C|1|2|A|926
6Y7C|1|2|C|927

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S14-A