IL_6YDP_026

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACAUC*GCCAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_026 not in the Motif Atlas

Geometric match to IL_8HNT_002

Geometric discrepancy: 0.314

The information below is about IL_8HNT_002

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

6YDP|1|AA|A|537
6YDP|1|AA|C|538
6YDP|1|AA|A|539
6YDP|1|AA|U|540
6YDP|1|AA|C|541
*
6YDP|1|AA|G|824
6YDP|1|AA|C|825
6YDP|1|AA|C|826
6YDP|1|AA|A|827
6YDP|1|AA|U|828

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

uS9m

Chain AX

mRNA

Chain Am

mS37