IL_6YDP_100

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCAGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_100 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2269

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6YDP|1|BA|C|1454
6YDP|1|BA|C|1455
6YDP|1|BA|C|1456
6YDP|1|BA|A|1457
6YDP|1|BA|G|1458
6YDP|1|BA|U|1459
6YDP|1|BA|A|1460
6YDP|1|BA|C|1461
*
6YDP|1|BA|G|1466
6YDP|1|BA|G|1467
6YDP|1|BA|A|1468
6YDP|1|BA|C|1469
6YDP|1|BA|A|1470
6YDP|1|BA|A|1471
6YDP|1|BA|G|1472

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BC

Elongation factor G, mitochondrial

Chain BO

uL14m