IL_6YLY_051

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_051 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1152

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6YLY|1|1|G|1444
6YLY|1|1|U|1445
6YLY|1|1|A|1446
6YLY|1|1|G|1447
6YLY|1|1|U|1448
6YLY|1|1|A|1449
6YLY|1|1|G|1450
*
6YLY|1|1|C|2354
6YLY|1|1|G|2355
6YLY|1|1|A|2356
6YLY|1|1|A|2357
6YLY|1|1|A|2358
6YLY|1|1|C|2359

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain P

60S ribosomal protein L17-A