IL_6YLY_079

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6YLY|1|1|A|3142, 6YLY|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_079 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.216

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6YLY|1|1|C|3004
6YLY|1|1|A|3005
6YLY|1|1|A|3006
6YLY|1|1|U|3007
*
6YLY|1|1|A|3139
6YLY|1|1|G|3140
6YLY|1|1|A|3141
6YLY|1|1|A|3142
6YLY|1|1|C|3143
6YLY|1|1|G|3144

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A