IL_6YPU_025

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6YPU|1|2|A|529, 6YPU|1|2|U|531, 6YPU|1|2|A|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1135

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6YPU|1|2|G|512
6YPU|1|2|U|513
6YPU|1|2|G|514
6YPU|1|2|C|515
6YPU|1|2|C|516
6YPU|1|2|A|517
6YPU|1|2|G|518
*
6YPU|1|2|C|525
6YPU|1|2|G|526
6YPU|1|2|G|527
6YPU|1|2|U|528
6YPU|1|2|A|529
6YPU|1|2|A|530
6YPU|1|2|U|531
6YPU|1|2|A|532
6YPU|1|2|C|533

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12