IL_6YPU_029
3D structure
- PDB id
- 6YPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAAUCC*GAAUUG
- Length
- 14 nucleotides
- Bulged bases
- 6YPU|1|2|U|629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YPU_029 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.0732
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6YPU|1|2|U|602
6YPU|1|2|G|603
6YPU|1|2|A|604
6YPU|1|2|A|605
6YPU|1|2|A|606
6YPU|1|2|U|607
6YPU|1|2|C|608
6YPU|1|2|C|609
*
6YPU|1|2|G|625
6YPU|1|2|A|626
6YPU|1|2|A|627
6YPU|1|2|U|628
6YPU|1|2|U|629
6YPU|1|2|G|630
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
- Chain i
- 30S ribosomal protein S8
- Chain q
- 30S ribosomal protein S16
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