IL_6YPU_033

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6YPU|1|2|A|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_033 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1017

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6YPU|1|2|U|681
6YPU|1|2|G|682
6YPU|1|2|U|683
6YPU|1|2|A|684
6YPU|1|2|G|685
*
6YPU|1|2|C|696
6YPU|1|2|G|697
6YPU|1|2|U|698
6YPU|1|2|A|699
6YPU|1|2|G|700
6YPU|1|2|A|701
6YPU|1|2|G|702
6YPU|1|2|A|703

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S11