IL_6ZCE_020
3D structure
- PDB id
- 6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 6ZCE|1|A|U|313, 6ZCE|1|A|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZCE_020 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1567
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6ZCE|1|A|U|311
6ZCE|1|A|A|312
6ZCE|1|A|U|313
6ZCE|1|A|C|314
6ZCE|1|A|A|315
6ZCE|1|A|A|316
*
6ZCE|1|A|U|348
6ZCE|1|A|U|349
6ZCE|1|A|U|350
6ZCE|1|A|C|351
6ZCE|1|A|A|352
6ZCE|1|A|A|353
6ZCE|1|A|C|354
6ZCE|1|A|G|355
Current chains
- Chain A
- 18S ribosomal RNA (1719-MER)
Nearby chains
- Chain J
- 40S ribosomal protein S8-A
- Chain M
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S23-A
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: