IL_6ZCE_028
3D structure
- PDB id
- 6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GAUAC*GUAAUU
- Length
- 11 nucleotides
- Bulged bases
- 6ZCE|1|A|A|506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZCE_028 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.3542
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6ZCE|1|A|G|480
6ZCE|1|A|A|481
6ZCE|1|A|U|482
6ZCE|1|A|A|483
6ZCE|1|A|C|484
*
6ZCE|1|A|G|503
6ZCE|1|A|U|504
6ZCE|1|A|A|505
6ZCE|1|A|A|506
6ZCE|1|A|U|507
6ZCE|1|A|U|508
Current chains
- Chain A
- 18S ribosomal RNA (1719-MER)
Nearby chains
- Chain K
- 40S ribosomal protein S9-A
- Chain f
- 40S ribosomal protein S30-A
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
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