3D structure

PDB id
6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 43S pre-initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GAUAC*GUAAUU
Length
11 nucleotides
Bulged bases
6ZCE|1|A|A|506
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZCE_028 not in the Motif Atlas
Geometric match to IL_5BTM_001
Geometric discrepancy: 0.3542
The information below is about IL_5BTM_001
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6ZCE|1|A|G|480
6ZCE|1|A|A|481
6ZCE|1|A|U|482
6ZCE|1|A|A|483
6ZCE|1|A|C|484
*
6ZCE|1|A|G|503
6ZCE|1|A|U|504
6ZCE|1|A|A|505
6ZCE|1|A|A|506
6ZCE|1|A|U|507
6ZCE|1|A|U|508

Current chains

Chain A
18S ribosomal RNA (1719-MER)

Nearby chains

Chain K
40S ribosomal protein S9-A
Chain f
40S ribosomal protein S30-A
Chain p
Eukaryotic translation initiation factor 3 subunit B

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2324 s
Application loaded.