IL_6ZCE_033
3D structure
- PDB id
- 6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6ZCE|1|A|A|579, 6ZCE|1|A|U|581, 6ZCE|1|A|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZCE_033 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1395
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZCE|1|A|G|562
6ZCE|1|A|U|563
6ZCE|1|A|G|564
6ZCE|1|A|C|565
6ZCE|1|A|C|566
6ZCE|1|A|A|567
6ZCE|1|A|G|568
*
6ZCE|1|A|C|575
6ZCE|1|A|G|576
6ZCE|1|A|G|577
6ZCE|1|A|U|578
6ZCE|1|A|A|579
6ZCE|1|A|A|580
6ZCE|1|A|U|581
6ZCE|1|A|U|582
6ZCE|1|A|C|583
Current chains
- Chain A
- 18S ribosomal RNA (1719-MER)
Nearby chains
- Chain E
- 40S ribosomal protein S3
- Chain Y
- 40S ribosomal protein S23-A
- Chain f
- 40S ribosomal protein S30-A
- Chain i
- Eukaryotic translation initiation factor 1A
- Chain s
- Eukaryotic translation initiation factor 3 subunit J
Coloring options: