IL_6ZCE_051

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_051 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.1973

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6ZCE|1|A|C|990
6ZCE|1|A|G|991
6ZCE|1|A|A|992
6ZCE|1|A|A|993
6ZCE|1|A|G|994
*
6ZCE|1|A|C|1010
6ZCE|1|A|G|1011
6ZCE|1|A|U|1012
6ZCE|1|A|A|1013
6ZCE|1|A|G|1014

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain P

40S ribosomal protein S14-A

Chain b

40S ribosomal protein S26-A