IL_6ZM5_018

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM5_018 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.1578

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near cWW basepair

Broad Annotation

Isolated near cWW basepair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

6ZM5|1|A|U|2168
6ZM5|1|A|A|2169
6ZM5|1|A|G|2170
*
6ZM5|1|A|C|2190
6ZM5|1|A|A|2191
6ZM5|1|A|A|2192

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial