IL_6ZN5_017

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6ZN5|1|2|U|305, 6ZN5|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_017 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3765

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ZN5|1|2|C|216
6ZN5|1|2|A|217
6ZN5|1|2|U|218
6ZN5|1|2|U|219
*
6ZN5|1|2|A|302
6ZN5|1|2|C|303
6ZN5|1|2|C|304
6ZN5|1|2|U|305
6ZN5|1|2|C|306
6ZN5|1|2|G|307
6ZN5|1|2|G|308
6ZN5|1|2|G|309

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8