IL_6ZN5_035
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6ZN5|1|2|A|628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZN5_035 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1518
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZN5|1|2|G|611
6ZN5|1|2|U|612
6ZN5|1|2|G|613
6ZN5|1|2|C|614
6ZN5|1|2|C|615
6ZN5|1|2|A|616
6ZN5|1|2|G|617
*
6ZN5|1|2|C|624
6ZN5|1|2|G|625
6ZN5|1|2|G|626
6ZN5|1|2|U|627
6ZN5|1|2|A|628
6ZN5|1|2|A|629
6ZN5|1|2|U|630
6ZN5|1|2|U|631
6ZN5|1|2|C|632
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S3
- Chain X
- 40S ribosomal protein S23
- Chain e
- 40S ribosomal protein S30
- Chain g
- Ribosomal protein S27a
- Chain i
- Non-structural protein 1
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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