IL_6ZN5_048

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_048 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.0928

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZN5|1|2|G|928
6ZN5|1|2|G|929
6ZN5|1|2|C|930
6ZN5|1|2|C|931
*
6ZN5|1|2|G|1010
6ZN5|1|2|A|1011
6ZN5|1|2|A|1012
6ZN5|1|2|U|1013

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27