IL_6ZN5_061
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6ZN5|1|2|C|1215, 6ZN5|1|2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZN5_061 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1222
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6ZN5|1|2|A|1214
6ZN5|1|2|C|1215
6ZN5|1|2|C|1216
6ZN5|1|2|A|1217
*
6ZN5|1|2|U|1681
6ZN5|1|2|C|1682
6ZN5|1|2|C|1683
6ZN5|1|2|C|1684
6ZN5|1|2|U|1685
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S5
- Chain R
- 40S ribosomal protein S16
- Chain c
- 40S ribosomal protein S26
- Chain d
- 40S ribosomal protein S28
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