IL_6ZN5_100

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6ZN5|1|2|A|1825

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZN5|1|2|C|1708
6ZN5|1|2|G|1709
6ZN5|1|2|C|1710
6ZN5|1|2|U|1711
*
6ZN5|1|2|A|1822
6ZN5|1|2|A|1823
6ZN5|1|2|A|1824
6ZN5|1|2|A|1825
6ZN5|1|2|G|1826

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23