IL_6ZON_022
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 6ZON|1|2|U|361, 6ZON|1|2|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZON_022 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.0843
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6ZON|1|2|U|359
6ZON|1|2|A|360
6ZON|1|2|U|361
6ZON|1|2|C|362
6ZON|1|2|A|363
6ZON|1|2|A|364
*
6ZON|1|2|U|396
6ZON|1|2|G|397
6ZON|1|2|A|398
6ZON|1|2|C|399
6ZON|1|2|C|400
6ZON|1|2|A|401
6ZON|1|2|C|402
6ZON|1|2|G|403
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Eukaryotic translation initiation factor 3 subunit C
- Chain j
- 40S ribosomal protein S23
- Chain n
- 40S ribosomal protein S11
- Chain t
- 40S ribosomal protein S8
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