IL_6ZON_035
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6ZON|1|2|A|628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZON_035 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1625
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZON|1|2|G|611
6ZON|1|2|U|612
6ZON|1|2|G|613
6ZON|1|2|C|614
6ZON|1|2|C|615
6ZON|1|2|A|616
6ZON|1|2|G|617
*
6ZON|1|2|C|624
6ZON|1|2|G|625
6ZON|1|2|G|626
6ZON|1|2|U|627
6ZON|1|2|A|628
6ZON|1|2|A|629
6ZON|1|2|U|630
6ZON|1|2|U|631
6ZON|1|2|C|632
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- Host translation inhibitor Nsp1
- Chain T
- 40S ribosomal protein S30
- Chain b
- 40S ribosomal protein S3
- Chain j
- 40S ribosomal protein S23
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