IL_6ZON_055
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZON_055 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.0943
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6ZON|1|2|C|1047
6ZON|1|2|G|1048
6ZON|1|2|A|1049
6ZON|1|2|A|1050
6ZON|1|2|G|1051
*
6ZON|1|2|C|1067
6ZON|1|2|G|1068
6ZON|1|2|U|1069
6ZON|1|2|A|1070
6ZON|1|2|G|1071
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S26
- Chain i
- 40S ribosomal protein S14
Coloring options: