IL_6ZON_096
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6ZON|1|2|C|1215, 6ZON|1|2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZON_096 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.3935
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
6ZON|1|2|A|1214
6ZON|1|2|C|1215
6ZON|1|2|C|1216
6ZON|1|2|A|1217
*
6ZON|1|2|U|1681
6ZON|1|2|C|1682
6ZON|1|2|C|1683
6ZON|1|2|C|1684
6ZON|1|2|U|1685
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S28
- Chain e
- 40S ribosomal protein S5
- Chain g
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S20
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