IL_6ZQB_055

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_055 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.1923

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6ZQB|1|D3|C|627
6ZQB|1|D3|G|628
6ZQB|1|D3|U|629
6ZQB|1|D3|A|630
6ZQB|1|D3|G|631
*
6ZQB|1|D3|U|968
6ZQB|1|D3|C|969
6ZQB|1|D3|A|970
6ZQB|1|D3|A|971
6ZQB|1|D3|G|972

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DN

40S ribosomal protein S13

Chain DW

40S ribosomal protein S22-A

Chain JO

KRR1 small subunit processome component