IL_6ZQB_090

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCC*GUGUAA

Length

10 nucleotides

Bulged bases

6ZQB|1|D2|U|382, 6ZQB|1|D2|A|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_090 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.2707

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ZQB|1|D2|U|340
6ZQB|1|D2|G|341
6ZQB|1|D2|C|342
6ZQB|1|D2|C|343
*
6ZQB|1|D2|G|381
6ZQB|1|D2|U|382
6ZQB|1|D2|G|383
6ZQB|1|D2|U|384
6ZQB|1|D2|A|385
6ZQB|1|D2|A|386

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain JN

Protein FAF1

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UN

U3 small nucleolar RNA-associated protein 14,U3 small nucleolar RNA-associated protein 14