IL_6ZQB_111
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUG*UUU
- Length
- 7 nucleotides
- Bulged bases
- 6ZQB|1|D2|U|176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_111 not in the Motif Atlas
- Geometric match to IL_8P9A_413
- Geometric discrepancy: 0.3495
- The information below is about IL_8P9A_413
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
6ZQB|1|D2|A|175
6ZQB|1|D2|U|176
6ZQB|1|D2|U|177
6ZQB|1|D2|G|178
*
6ZQB|1|D2|U|219
6ZQB|1|D2|U|220
6ZQB|1|D2|U|221
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain UP
- Bud site selection protein 21
Coloring options: