IL_6ZQE_056

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_056 not in the Motif Atlas

Geometric match to IL_7A0S_049

Geometric discrepancy: 0.2923

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6ZQE|1|D3|C|990
6ZQE|1|D3|G|991
6ZQE|1|D3|A|992
6ZQE|1|D3|A|993
6ZQE|1|D3|G|994
*
6ZQE|1|D3|C|1010
6ZQE|1|D3|G|1011
6ZQE|1|D3|U|1012
6ZQE|1|D3|A|1013
6ZQE|1|D3|G|1014

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DO

40S ribosomal protein S14-A

Chain JL

Dimethyladenosine transferase