IL_6ZQE_062
3D structure
- PDB id
- 6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6ZQE|1|D3|C|1158, 6ZQE|1|D3|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQE_062 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.24
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6ZQE|1|D3|A|1157
6ZQE|1|D3|C|1158
6ZQE|1|D3|C|1159
6ZQE|1|D3|A|1160
*
6ZQE|1|D3|U|1617
6ZQE|1|D3|C|1618
6ZQE|1|D3|C|1619
6ZQE|1|D3|C|1620
6ZQE|1|D3|U|1621
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain DF
- 40S ribosomal protein S5
- Chain Dc
- 40S ribosomal protein S28-A
- Chain UA
- Periodic tryptophan protein 2
- Chain UL
- U3 small nucleolar RNA-associated protein 12
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