IL_6ZQF_029

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6ZQF|1|D3|A|619, 6ZQF|1|D3|A|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQF_029 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2449

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6ZQF|1|D3|G|616
6ZQF|1|D3|U|617
6ZQF|1|D3|U|618
6ZQF|1|D3|A|619
6ZQF|1|D3|A|620
6ZQF|1|D3|A|621
6ZQF|1|D3|A|622
*
6ZQF|1|D3|U|1104
6ZQF|1|D3|C|1105

Current chains

Chain D3

18S rRNA

Nearby chains

Chain D4

U3 snoRNA

Chain DX

40S ribosomal protein S23-A