IL_6ZU5_040

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAGUAG*CGAACC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_040 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1182

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZU5|1|L50|G|1152
6ZU5|1|L50|C|1153
6ZU5|1|L50|A|1154
6ZU5|1|L50|G|1155
6ZU5|1|L50|U|1156
6ZU5|1|L50|A|1157
6ZU5|1|L50|G|1158
*
6ZU5|1|L50|C|1823
6ZU5|1|L50|G|1824
6ZU5|1|L50|A|1825
6ZU5|1|L50|A|1826
6ZU5|1|L50|C|1827
6ZU5|1|L50|C|1828

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LC0

uL4

Chain LP0

uL22