IL_6ZU5_058

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UCAA

Length

6 nucleotides

Bulged bases

6ZU5|1|L50|C|1711, 6ZU5|1|L50|A|1712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_058 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0885

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZU5|1|L50|U|1669
6ZU5|1|L50|G|1670
*
6ZU5|1|L50|U|1710
6ZU5|1|L50|C|1711
6ZU5|1|L50|A|1712
6ZU5|1|L50|A|1713

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LA0

uL2

Chain S60

Small subunit ribosomal RNA; SSU rRNA